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Humann2 required metaphlan database download fails
Hello, I installed humann2 through conda and when I ran it I got the following error:
Downloading MetaPhlAn2 database
Please note due to the size this might take a few minutes
Downloading https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.tar
Warning: Unable to download https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.tar
Downloading https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.md5
Warning: Unable to download https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.md5
File "/wynton/home/lynchlab/elzerac/.conda/envs/py27/bin/databases/mpa_v20_m200.md5" not found!File "/wynton/home/lynchlab/elzerac/.conda/envs/py27/bin/databases/mpa_v20_m200.tar" not found!MD5 checksums not found, something went wrong!
I installed using conda env create --file py27.yml attached here. I also tried to install humann2 directly from conda in a new env. In both cases I get this error. I confirmed that the .tar and .md5 filse are missing.
I cannot find this database online and get an authentication error if i try wget https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.md5
humann2_test --run-funcitonal-tests-end-to-end stalls at running metaphlan.py
Did the location of this database change? If not, could you provide a way for me to download it? Thank you so much!
Elze
Same problem. Here is the error note:
Error message returned from metaphlan2.py :
Downloading MetaPhlAn2 database Please note due to the size this might take a few minutes
Downloading https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.tar
Downloading https://bitbucket.org/biobakery/metaphlan2/downloads/mpa_v20_m200.md5 Enter username for Bitbucket.org HTTP at bitbucket.org: Enter username for Bitbucket.org HTTP at bitbucket.org: MD5 checksums not found, something went wrong!
MD5 file says I need to login to bitbucket and I don't have access.
Best, Peidi
