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Published 20 hours ago • verified publisher icon bio-ontology-research-group

Bug in AddAncestors.pl

Open chelseaju opened this issue 5 years ago • 1 comments

https://github.com/bio-ontology-research-group/onto2vec/blob/7402b8a47d11087a4d764d52bc2a0918de2e1697/AddAncestors.pl#L34

Currently, AddAncestors.pl is not including all of the ancestors of a GO term. The $newline variable is redefined with an empty value. This need to be fixed by removing "my".

Line 33 ends with "\n", causing the final output printing an extra newline character.

chelseaju avatar Mar 27 '19 17:03 chelseaju

Thank you very much for your comment. The bugs have been fixed. I would like to encourage you to use our updated and more user-friendly embedding method available at: https://github.com/bio-ontology-research-group/opa2vec

fzohrasmaili avatar Mar 28 '19 09:03 fzohrasmaili