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Closes #637

Open davidkartchner opened this issue 1 year ago • 1 comments

Add the plant-phenotype dataset. Closes #637

New location for dataset (that corrects errors of nested/missing entities): https://github.com/davidkartchner/PPRcorpus

Checkbox

  • [x] Confirm that this PR is linked to the dataset issue.
  • [x] Create the dataloader script biodatasets/my_dataset/my_dataset.py (please use only lowercase and underscore for dataset naming).
  • [x] Provide values for the _CITATION, _DATASETNAME, _DESCRIPTION, _HOMEPAGE, _LICENSE, _URLs, _SUPPORTED_TASKS, _SOURCE_VERSION, and _BIGBIO_VERSION variables.
  • [x] Implement _info(), _split_generators() and _generate_examples() in dataloader script.
  • [x] Make sure that the BUILDER_CONFIGS class attribute is a list with at least one BigBioConfig for the source schema and one for a bigbio schema.
  • [x] Confirm dataloader script works with datasets.load_dataset function.
  • [x] Confirm that your dataloader script passes the test suite run with python -m tests.test_bigbio biodatasets/my_dataset/my_dataset.py.
  • [x] If my dataset is local, I have provided an output of the unit-tests in the PR (please copy paste). This is OPTIONAL for public datasets, as we can test these without access to the data files.

davidkartchner avatar Jul 26 '22 19:07 davidkartchner