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Dataview "error" message under GTEX tissue expression for non-coding genes (V3)

Open AxelBigOmics opened this issue 1 year ago • 4 comments

Under "Dataview", some genes (e.g. pseudogenes) that have no entries in GTEX give an error message. While this is the correct behaviour, it gives the impression that the platform is broken. Can the missing data be handled differently (e.g. a message indicating that no data is available?):

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AxelBigOmics avatar May 30 '23 08:05 AxelBigOmics

@ivokwee Is this solved? If not, which dataset can I use to reproduce it? Easy to solve with the validate shiny function

ESCRI11 avatar Jun 06 '23 21:06 ESCRI11

Adding "lacks info" label - we need to identify some specific genes that cause this issue before it can be addressed.

ncullen93 avatar Jun 19 '23 13:06 ncullen93

Which dataset did you use to trigger the bug?

phisanti avatar Jun 22 '23 15:06 phisanti

dataset and settings, as pseudo genes should be removed in default settings (?)

mauromiguelm avatar Jun 22 '23 15:06 mauromiguelm

archiving as stale.

ivokwee avatar Sep 06 '24 16:09 ivokwee