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Standardize column names when initializing data

Open z3tt opened this issue 2 years ago • 1 comments

Currently, the naming of columns seems to be inconsistent. I was trying the GSE72056-scmelanoma data set which caused some problems as ggplot couldn't find the correct columns.

In the genePlots_tsne.RENDER() function, the returned columns for position are tSNE.x and tSNE.y for the example data but X1 and X2 for the melanoma data.

z3tt avatar Mar 30 '22 09:03 z3tt

This is because using base plots we didn't rigorously checked the column names, but for example just use the first two columns. The functions pgx.initialize() after loading, could be used to update/standardize namings.

ivokwee avatar Apr 08 '22 08:04 ivokwee

This issue is stale because it has been open for 30 days with no activity. It will close in 14 days.

github-actions[bot] avatar Dec 24 '22 23:12 github-actions[bot]

This issue was closed because it has been inactive for 14 days since being marked as stale.

github-actions[bot] avatar Jan 08 '23 23:01 github-actions[bot]