quantms icon indicating copy to clipboard operation
quantms copied to clipboard

add IsobaricWorkflow to TMT workflow

Open MaLLLiYA opened this issue 2 months ago • 4 comments

PR checklist

  • [ ] This comment contains a description of changes (with reason).
  • [ ] If you've fixed a bug or added code that should be tested, add tests!
  • [ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • [ ] If necessary, also make a PR on the bigbio/quantms branch on the nf-core/test-datasets repository.
  • [ ] Make sure your code lints (nf-core pipelines lint).
  • [ ] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • [ ] Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • [ ] Usage Documentation in docs/usage.md is updated.
  • [ ] Output Documentation in docs/output.md is updated.
  • [ ] CHANGELOG.md is updated.
  • [ ] README.md is updated (including new tool citations and authors/contributors).

MaLLLiYA avatar Oct 30 '25 10:10 MaLLLiYA

[!IMPORTANT]

Review skipped

Draft detected.

Please check the settings in the CodeRabbit UI or the .coderabbit.yaml file in this repository. To trigger a single review, invoke the @coderabbitai review command.

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

✨ Finishing touches
🧪 Generate unit tests (beta)
  • [ ] Create PR with unit tests
  • [ ] Post copyable unit tests in a comment

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

Comment @coderabbitai help to get the list of available commands and usage tips.

coderabbitai[bot] avatar Oct 30 '25 10:10 coderabbitai[bot]

This tool is not merged into dev yet. I think you are building containers from dev only.

jpfeuffer avatar Oct 31 '25 07:10 jpfeuffer

I merged it now. You still need new containers.

jpfeuffer avatar Oct 31 '25 07:10 jpfeuffer

I need to build the container, give me the weekend.

ypriverol avatar Oct 31 '25 08:10 ypriverol