med-imagetools

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skim2257

Add CT-SEG to Datagraph

2

Added code to `datagraph.py` to create edge_type 7 (SEG -> CT) and added support to query them. Currently working on allowing SEGs to be converted to NIFTIs. Needs manual testing...

uyousafzai54

Handling added for uppercase and lowercase .dcm or .Dcm files in crawl function. Fixed database_list to database_dict conversion to merge dictionaries with the same key (patient ID) so all information...

strixy16

clearer autopipeline example

skim2257

Create internal list of dataset directory

1

skim2257

DICOM-Segmentation Module IO

1

Test robustness with multiple datasets.

skim2257

Running ```autopipeline /Users/katyscott/Documents/SARC021/images/ /Users/katyscott/Documents/SARC021/med-imageout/ --n_jobs 1 --update --overwrite``` doesn't find all of the CT and RTSTRUCT files in the images directory. My images directory contains four directories total - one...

strixy16

To-do - Write documentation for H4H Public/Processed/Internal_Datasets management - Integrate docstring into official repo docs - [CARYN] QC checks to output FAILURE - assert image.shape == theoretical_shape - ex) assert...

skim2257

- does contour fall within image bounds? - other TCIA QC check

skim2257

assert image.shape == theoretical_shape - ex) assert spacing = image.GetSpacing() - ex) spacing = 1, 1, 2 -> orig_img.shape / spacing = image.GetSpacing()

skim2257