PharmacoGx
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Is retrieval of connectivity at cell line level possible?
Dear PharmacoGx authors,
I find PharmacoGx very useful for my research. I recently tried running it with my input signatures following the guide https://bioconductor.org/packages/release/bioc/vignettes/PharmacoGx/inst/doc/PharmacoGx.pdf
I realized that the drug.perturbation object keeps summarized drugs. I could not retrieve the connectivity for a specific drug, at a specific concentration and on a specific cell line. Is this is possible? I would really like to get information at cell line level.
Thank you very much, Eleni Christodoulou