Brian Lee

MultiVI Tensor shape invalid values nan

3

I am trying to use multivi on a paired 10x multiome (rna+atac) dataset. I've taken the mudata object with raw counts and made it into an anndata object for MultiVI....

Dear SCENIC+ team. Thanks so much again for building such a wonderful package. I've been noticing while inferring trajectories that the arrow direction/placement will keep on changing each time I...

Calculate path matrices for differentiation arrows (branched tracjectory)

3

Hi scenicplus team. Thanks for building such a great package! I've been working on generating on a branched differentation tracjetory analysis, but I can't manage to get the plot_potential() graph...

Hi MultiVelo team, I have imported in the seurat WNN neighbors distance and idx files as numpy arrays, made sure the cell names matched, but when I try to trun...