RNAz - wrapper needs updating

[smithcr]

wrapper for RNAz needs fixing

• [ ] Score [which] strand should be param type select:
  • forward
  • reverse
  • both
• [ ] use (di/mono)nucleotide shuffled z-scores should be select.
• [ ] mononucleotide shuffled z-scores may also be broken in source...not sure yet. When used on my set (~100) of (diverse) sequence alignments, almost all SVM decision values = -0.51, SVM RNA-class probabilities = 0.287696.
• [x] help text needs expansion
• [x] citation should be moved to appropriate tag

Repository should perhaps be migrated to rnateam.

[bgruening]

Have you check the latest wrapper? https://github.com/bgruening/galaxytools/blob/master/tools/rna_tools/rnaz/rnaz.xml Documentation should be improved and citations as well.

[TorHou]

@zwanli Could you have a look at that issue? http://www.tbi.univie.ac.at/~wash/RNAz/

[jfallmann]

Any progress here? It would also be a good idea to integrate the RNAz helper scripts for input preprocessing to galaxy, otherwise it is rather impossible to get reasonable output without manual preprocessing.

[bgruening]

I don't think anyone is working on this issue anymore :-(