galaxy-rna-workbench
galaxy-rna-workbench copied to clipboard
Published
20 hours ago •
bgruening
bgruening
Status of the tools
| Tools | Status of the tool | Status of the wrapper | Assigned to? |
|---|---|---|---|
| antaRNA | |||
| CoFold | |||
| Kinwalker | |||
| MEA | |||
| RNAshapes | |||
| RNAz | |||
| segmentation-fold | |||
| ViennaRNA | To udpate | @eggzilla | |
| Compalignp | |||
| LocARNA | |||
| MAFFT | |||
| RNAlien | |||
| ARAGORN | |||
| Fusion Matcher (FuMa) | |||
| GotohScan | |||
| INFERNAL | |||
| RNABOB | |||
| RNAcode | |||
| RNAmmer | |||
| tRNAscan | |||
| RCAS | |||
| AREsite2 | |||
| DoRiNA | |||
| PARalyzer | |||
| Piranha | |||
| TargetFinder | |||
| FastQC | |||
| Trim Galore! | |||
| BlockClust | |||
| FlaiMapper | |||
| MiRDeep2 | |||
| NASTIseq | |||
| PIPmiR | |||
| SortMeRNA | |||
| HISAT2 | |||
| STAR | |||
| STAR-fusion | |||
| Bowtie 2 | |||
| BWA | |||
| Trinity | |||
| featureCounts | |||
| htseq-count | |||
| Sailfish | |||
| Salmon | |||
| DESeq2 | |||
| SAMtools | |||
| BEDTools | |||
| deepTools | |||
| RiboTaper |
