install-tools permissions issue

[innovate-invent]

using install-tools while the USER is root causes galaxy to write all files with root ownership, this prevents galaxy from starting normally.

using install-tools while USER is $GALAXY_USER fails to start galaxy. It may be failing to start the PostGRES server.

[kmshort]

YES! I have this problem too, but with just starting galaxy with a local /export directory in place.