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@chapmanb is there an easy solution for this? I stumbled over this as well, as I tried to integrate protein sequences to CDS records.
@chapmanb yes I'm developing currently some Galaxy integration for gffutils, but this is lacking the conversion features as far as I know. You can not convert a gff-sqlite to genbank,...
@mikdur this would be great!
@mwojcikowski I think most of the dependencies should be there. We also have defined many datatypes + converters. It's just a matter of time. But this would be really awesome....
We could start with `oddt.scoring` and `oddt.docking` this is really weak or not existent in CTB. Otherwise what ever is the easiest function to get us started :)
Very good documentation is here: http://planemo.readthedocs.org/en/latest/ Thanks a lot! Bjoern
This is awesome! Do you want me to work on this or are you planning to do this?
Ok, I will work on this during the weekend. Galaxy can handle conda dependencies natively, so no need for docker. But I have a chemicaltoolbox Docker Image and I plan...
Yeah, need to switch the image to conda - this will lower build times. If you want then contribute to bioconda. I think I have a openbabel build there.
Sure as you prefer Galaxy can handle this. Thanks this is exciting!