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Aperio anonymization does not delete macro image

Open markemus opened this issue 5 years ago • 5 comments

This is a big problem- the process deletes the label image but not the macro image, which also has a copy of the label, at least on certain scanner settings.

markemus avatar Jun 23 '20 22:06 markemus

When I tested the program, it doesn't delete either for svs file.

gregster7 avatar Dec 31 '21 22:12 gregster7

@gregster7 check my PR here https://github.com/bgilbert/anonymize-slide/pull/6 which adds removal of macro images for aperio. Should work for svs although I wrote it for aperio tiff.

markemus avatar Jan 01 '22 17:01 markemus

@markemus, @gregster7: Within the EMPAIA project, we have now developed our own solution for anonymizing WSIs (in various formats). This is currently available via Gitlab . The paper for this is currently in review, the preprint can already be viewed at arXiv.

Tomatenbiss avatar Nov 14 '22 08:11 Tomatenbiss

@Tomatenbiss This is great news! FYI arXiv link is broken - maybe typo?

gregster7 avatar Nov 14 '22 14:11 gregster7

A point has snuck into the link. I fixed it, so it should work now. Just in case: https://arxiv.org/abs/2211.06103

Tomatenbiss avatar Nov 15 '22 10:11 Tomatenbiss