Beth Cimini
Beth Cimini
I've tried this in a few situations on my mac and could not reproduce with 48 image sets: 4.0.7 built 4.1.3 built 4.1.3 source 4.1.3 source, using an "Elsewhere" location...
Cannot validate with 240 image sets either.
@lakshmibalasubramanian and I discussed this issue yesterday; I suspect it's due to the fact that we hard-code the file formats we allow in python-bioformats [here](https://github.com/CellProfiler/python-bioformats/blob/master/bioformats/__init__.py#L35-L47), and it looks like that...
We should consider if a hard-coded list is the way to go, or if not whether we at least want to set ourselves quarter-ish-ly reminders to review the list and...
Yup, that would certainly work in the meantime.
``` for module in pipeline.modules(): if module in some_selection_condition_I_need_to_look_up: settings = {x:module.settings()[x].value for x in range(len(module.settings))} for k, v in settings.items(): if type(v) == str: module.settings()[k].value = v.replace(to_replace,replacement) ```
@gwaygenomics @roshankern a test file would indeed be great. I also hope it's a simple fix but I can't promise that it is so.
There is no reason I can think of that it would be inherently worse; in terms of "how long does it take to open X image", I definitely haven't benchmarked...
If it's ok, I'd like to keep this open to eventually be able to address the issue of opening it with p-b
Hi, Have you confirmed Javabridge is actually working on your system, ie if you start python and ```python import javabridge javabridge.start_vm() ``` does javabridge throw an error? Have you set...