ivis

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In addition to the pypi package, please add a conda-forge package (https://conda-forge.org). I can give support if needed. You can easily create a boilerplate conda recipe with grayskull (starting from...

candalfigomoro

Custom generator for training on out-of-memory datasets

5

In https://bering-ivis.readthedocs.io/en/latest/oom_datasets.html, for out-of-memory datasets, you say to train on h5 files that exist on disk. In my case, I can't use h5 files, but I could use a custom...

candalfigomoro

Distance-weighted random sampling of non-neighbor negatives

2

Not a fully-baked feature request, just a directional hunch. I've found the conclusions from this paper [Sampling Matters in Deep Embedding Learning](https://arxiv.org/abs/1706.07567) pretty intuitive -- (1) the method for choosing...

sheffe

InternalError: Graph execution error:

3

Hello， I want to use `ivis` to do the analysis for my scRNA-seq data. Here is my code: ```python def getReduction(X): #X = PCA(n_components=4, copy=True, random_state=1).fit_transform(X) from ivis import Ivis...

bitcometz

[TensorFlow 2.16.1 recently released](https://github.com/tensorflow/tensorflow/releases/tag/v2.16.1), but using it will break ivis workflows. See error log from running tests [here](https://github.com/beringresearch/ivis/actions/runs/8222082994/job/22483178136). Error list: - ValueError: The layer sequential has never been called and...

Szubie

2D visulization of crowded cluster with ivis

1

I test the 2D visulization of ivis with mnist dataset. I found the distribution of point is very crowded in the 2D figure, my code is below: ``` from sklearn.datasets...

yuxiaokang-source