Error in asMethod(object) : long vectors not supported yet: memory.c:3948

[ypchan]

Hi Ben,

I’m running filterAndTrim() and keep hitting the error below. Could you advise on how to resolve this?

Error in filterAndTrim(fwd = fastqFs, filt = filtFs, rev = fastqRs, filt.rev = filtRs,  :
  These are the errors (up to 5) encountered in individual cores...
Error in asMethod(object) : long vectors not supported yet: memory.c:3948
Error in asMethod(object) : long vectors not supported yet: memory.c:3948
Error in asMethod(object) : long vectors not supported yet: memory.c:3948
Error in asMethod(object) : long vectors not supported yet: memory.c:3948
Error in asMethod(object) : long vectors not supported yet: memory.c:3948

Calls:  filterAndTrim
In addition: Warning message:
In mclapply(seq_len(n), do_one, mc.preschedule = mc.preschedule,  :
  scheduled cores 5, 3, 4, 6, 2 encountered errors in user code, all values of the jobs will be affected
Execution halted

I would appreciate your help in resolving this issue.

The data used can be accessed NCBI under bioproject PRJEB82662 .

Kind regards, Yanpeng