Benedict Paten

Oops about the log. Should use rotating logging. On Sat, Apr 12, 2014 at 2:41 PM, Mark Diekhans [email protected]: > Please add support for BED thick start/end. In addition to...

Oops, that's even worse! On Sat, Apr 12, 2014 at 10:09 PM, Mark Diekhans [email protected]: > Benedict Paten [email protected] writes: > > > Oops about the log. Should use rotating...

Hi Ilya, It's probably easier if you just send the log file (./temp3/cactus.log). It looks like their were issues starting and stopping the DB server. Benedict On Fri, Oct 18,...

Sorry for the trouble, what you're seeing looks like a mismatch between the read coordinates (presumably coming from the bam) and the reference sequences, as provided by the input fasta....

Hi Amina, Kay - Bit confused about who is doing what (sorry to not read in detail), but two points: - If the assembly provided and the bam that the...

Great. It is not trivial to increase the max allowable depth (because we use 64 bit integers to model bipartitions), but the simple solution is to realign each read >...

Stills needs tutorial on running em and doing adjustment of model with modifyHmm.

We already do try to do this, see: https://github.com/benedictpaten/jobTree/blob/master/src/job.py#L43 On Mon, Feb 2, 2015 at 9:58 AM, Joel Armstrong [email protected] wrote: > Didn't mean to imply that GPFS itself was...

Actually, the code can be simplified. The ".updating" file was there because of how we used to do it, but it can be removed and we should be able to...

The problem is parasol does not provide means to only list the jobs of a given user. Adding Galt. On Mon, Mar 16, 2015 at 5:09 PM, Mark Diekhans [email protected]...