Ben Dichter
Ben Dichter
I've implemented this with the following python script. I've only tested it on cvxpy. ```python import os from glob import glob import re import urllib.request from requests import get import...
@marius10p thanks for the tip. Would it be possible for Kilosort to check the available RAM and offer a more informative error?
@chrisroat I want to make sure this feature is not reduced to a mode that only works for a subset of users. I would prefer it to remain possible to...
@chrisroat that sounds a lot like what we have [here](https://github.com/catalystneuro/roiextractors/blob/master/roiextractors/extractors/suite2p/suite2psegmentationextractor.py). Example usage: ```python from roiextractors import NwbSegmentationExtractor, Suite2pSegmentationExtractor seg_ex = Suite2pSegmentationExtractor("segmentation_datasets/suite2p") NwbSegmentationExtractor.write_segmentation(seg_ex, "output_path.nwb") ``` This takes as input the standard...
Maybe if the namespace is loaded using `NWBHDF5IO` as a context, then whatever namespaces were loaded during `__enter__` and be removed during `__exit__`?
There is a potential issue in MatNWB, but only if a name is defined in a schema or extension. For instance, if you want to access the `start_time` of the...
@Ahad-Allen I would like to help but I can't quite understand what you are trying to accomplish. It would really help us if the code to reproduce the error is...
Would you maybe be able to upload one of these CSV files?
any thoughts on the syntax pattern? Whatever pattern we choose will be propagated through all of the neurodata types and maybe even extensions
Are there any similar projects we can build off of? [FactoryBoy](https://factoryboy.readthedocs.io/en/stable/) comes to mind, but it's a bit different in scope since it is for working with SQL databases.