Added slow5 parser

Open Koeng101 opened this issue 4 years ago • 2 comments

This PR will add a slow5 and blow5 format parser, from https://github.com/hasindu2008/slow5tools

This won't implement the fast5 -> slow5 functionality, but will be able to read and write those files for downstream use.

Oct 29 '21 18:10 Koeng101

Linter should be failing due to metadata being a lot. For coverage, we're going to have to add a ton of test files, which will be fun.

Oct 29 '21 18:10 Koeng101

https://pkg.go.dev/github.com/bmkessler/streamvbyte + https://pkg.go.dev/github.com/klauspost/compress/zstd should be useful for blow5 compression native to golang.

Nov 08 '21 23:11 Koeng101

@TimothyStiles Turns out I actually need this. I haven't implemented blow5, but slow5 is implemented here

Mar 23 '23 02:03 Koeng101