enasearch
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Support unicode characters
The following two commands work just fine:
enasearch retrieve_run_report --accession PRJNA473989 --file results.txt
enasearch retrieve_run_report --accession PRJNA473989
But the following gives an exception
$ enasearch retrieve_run_report --accession PRJNA473989 > /dev/null
Traceback (most recent call last):
File "/path/to/bin/enasearch", line 6, in <module>
from enasearch.__main__ import main
File "/path/to/lib/python2.7/site-packages/enasearch/__main__.py", line 6, in <module>
cli.cli()
File "/path/to/lib/python2.7/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/path/to/lib/python2.7/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/path/to/lib/python2.7/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/path/to/lib/python2.7/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/path/to/lib/python2.7/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/path/to/lib/python2.7/site-packages/enasearch/cli.py", line 20, in handle_exception
raise click.ClickException(e)
File "/path/to/lib/python2.7/site-packages/click/exceptions.py", line 23, in __init__
ctor_msg = ctor_msg.encode("utf-8")
AttributeError: 'exceptions.UnicodeEncodeError' object has no attribute 'encode'
This is because the run report has a Unicode character