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beast-dev
Posterior summarisation in Bayesian phylogenetics
Now that the parameter names are editable, it would be useful to export violin plots to PDF but without the axis labels as otherwise these still need to be removed...
I installed BEAST2 v2.5.0 via `conda`, which upgraded `fontconfig` from v2.12.1 to v2.13.1. After this, I tried to open Tracer v1.1.7, and it threw the following error: `java: symbol lookup...
For a joint density of 2 traces, plots for each tracefile could be overlayed using different colours (similar to the density plots).
Alternative to bubble plot? Or combine so background is optionally heatmap, bubbles can be switched off.
_From @msuchard on August 13, 2015 17:46_ Originally reported on Google Code with ID 210 ``` Put 'add calculated column' into Tracer. ``` Reported by `rambaut` on 2009-10-15 18:19:57 _Copied...
_From @msuchard on August 13, 2015 17:35_ Originally reported on Google Code with ID 149 ``` To help David to add another panel to plot auto-correlation in Tracer. ``` Reported...
It looks the histogram of the discrete value having few issues: 1. The value "3" is inside HPD interval, but the plot shows its bar is yellow. 2. Alexei thinks...
replace `MAX_LAG = 2000` to the proportion of sample size (chain length). Alexei hates the magic number. 😊 ```java final int samples = values.length; int maxLag = Math.min(samples - 1,...
Hi All, Could you please advise if this works on OpenJDK also? I have tried a couple of builds, however, haven't been able to get it to run. If it...
I can't generate a Bayesian skyline plot in tracer, due to the following error "Fatal exception during initializing group size: Group size 0 should be integer but found: 24755.704424064254". I...
