tracer
tracer copied to clipboard
beast-dev
Posterior summarisation in Bayesian phylogenetics
If value range is very small decimal numbers but the relative difference is huge, such as [1E-308, 1E-79], the `int binCount = (int) ((axis.getMaxAxis() - axis.getMinAxis()) / binSize) + 2;`...
It may be possible to include a complete 1.8 JVM within the Mac OS X .app package. This would solve users' JVM installation issues. Downside is that each app has...
Probably only makes sense if they are on the same set of categories. Show as stacked bars?
Show as separate plots stacked on top of each other.
Add a line to violin plots to denote the mean (as in the box plots). This should be shown even if there are too few data points to get a...
When loading a trace with categorical values into Tracer, it may contain several categories that were only visited during the burn-in. When the burn-in is subsequently omitted, some categories will...
The 'Setup...' button on the toolbar for plots (such as the density plot) allows the user to set the range for an axis. Currently these options are universal for that...
Could be an option alongside side-by-side columns.
Suggest just a few sizes or 'small, large, extra large'.
For those plots that show a credible interval or credible set, add a toolbar dropdown to set what this is (perhaps from some discrete values, i.e., 50%, 90%, 95%, 99%).