Using TreeDataLikelihood
Branch rate model used: strictClockBranchRates
Using BEAGLE DataLikelihood DelegAug 15, 2024 6:05:44 PM dr.app.beast.BeastMain
SEVERE: Parsing error - poorly formed BEAST file, 123.xml:
Error parsing '<scaleOperator>' element with id, 'null':
Scale operator can only be used on parameters constrained to be strictly positive or negative (demographic.popSize)
Error thrown at: dr.inferencexml.operators.ScaleOperatorParser.parseXMLObject(Unknown Source)
ate
Using BEAGLE resource 0: CPU (x86_64)
with instance flags: PRECISION_DOUBLE COMPUTATION_SYNCH EIGEN_REAL SCALING_MANUAL SCALERS_RAW VECTOR_SSE THREADING_CPP PROCESSOR_CPU FRAMEWORK_CPU
Ignoring ambiguities in tree likelihood.
With 93 unique site patterns.
Using rescaling scheme : dynamic (rescaling every 100 evaluations, delay rescaling until first overflow)
Using TreeDataLikelihood
Branch rate model used: strictClockBranchRates
BEAST has terminated with an error. Please select QUIT from the menu.
I am currently conducting an EBSP analysis with four gene partitions and have generated the configuration file (.xml). However, I encountered an error when running the configuration file, and I’m not sure where the problem lies. I would appreciate your guidance and assistance.
Can you share the XML you are using? Which version of BEAST are you running? The recent beta4 version?
beast-dev
