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Error loading PyMNE

Open geigermartin opened this issue 6 months ago • 1 comments

When I try this:

] add PyMNE
] add CondaPkg
> using CondaPkg
> CondaPkg.add("pandas")
> using PyMNE

I get this error:

ERROR: InitError: Python: ModuleNotFoundError: No module named 'numpy'
Python stacktrace:
 [1] <module>
   @ /tmp/jl_wh31xE/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/mne/utils/check.py:17
 [2] _parse_verbose
   @ mne.utils._logging /tmp/jl_wh31xE/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/mne/utils/_logging.py:225
 [3] set_log_level
   @ mne.utils._logging /tmp/jl_wh31xE/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/mne/utils/_logging.py:210
 [4] <module>
   @ /tmp/jl_wh31xE/.CondaPkg/.pixi/envs/default/lib/python3.12/site-packages/mne/__init__.py:35
Stacktrace:
  [1] pythrow()
    @ PythonCall.Core ~/.julia/packages/PythonCall/L4cjh/src/Core/err.jl:92
  [2] errcheck
    @ ~/.julia/packages/PythonCall/L4cjh/src/Core/err.jl:10 [inlined]
  [3] pyimport(m::String)
    @ PythonCall.Core ~/.julia/packages/PythonCall/L4cjh/src/Core/builtins.jl:1561
  [4] __init__()
    @ PyMNE ~/.julia/packages/PyMNE/cNGDN/src/PyMNE.jl:20
  [5] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1378
  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1366
  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{…}, ignore_native::Nothing; register::Bool)
    @ Base ./loading.jl:1254
  [8] _include_from_serialized (repeats 2 times)
    @ ./loading.jl:1210 [inlined]
  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{…}, DEPOT_PATH::Vector{…})
    @ Base ./loading.jl:2057
 [10] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2527
 [11] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2388
 [12] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [13] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [14] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2375
 [15] macro expansion
    @ ./loading.jl:2314 [inlined]
 [16] macro expansion
    @ ./lock.jl:273 [inlined]
 [17] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2271
 [18] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [19] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [20] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2260
during initialization of module PyMNE

geigermartin avatar Jun 24 '25 15:06 geigermartin

one clarificiation, if you then do CondaPkg.add("mne") - then it works. It seems CondaPkg for some reason activates the wrong environment when loaded extra

behinger avatar Jun 25 '25 06:06 behinger