r-causal

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``` f f$bayesIm [1] "Java-Object{\n\nNode: aspirin\n\nvaricosity\tanticoagulants\tvascular_diseases\tesophageal_varices\tmalloryHYPHENweiss_syndrome\tacute_gastric_mucosal_erosion\t\n0\t0\t0\t0\t0\t0\t0.9294\t0.0706 \t\n0\t0\t1\t0\t0\t0\t0.6000\t0.4000\t\n0\t1\t0\t0\t0\t0\t0.7619\t0.2381\t\n0\t1\t1\t0\t0\t0\t�\t�\t\n1\t0\t0\t0 \t0\t0\t0.7586\t0.2414\t\n1\t0\t1\t0\t0\t0\t�\t�\t\n1\t1\t0\t0\t0\t0\t1.0000\t0.0000\t\n1\t1\t1\t0\t0\t0\t�\t� \t\n\nNode: hemorrhoids\n\nesophageal_varices\tmalloryHYPHENweiss_syndrome \tacute_gastric_mucosal_erosion\tmedication\tade\t\n0\t0\t0\t0\t0\t0.9932\t0.0068\t\n0\t0\t0\t0\t1\t0.8367 \t0.1633\t\n0\t0\t0\t1\t0\t0.9468\t0.0532\t\n0\t0\t0\t1\t1\t0.8333\t0.1667\t\n\nNode: varicosity\n \nanticoagulants\tesophageal_varices\tmalloryHYPHENweiss_syndrome \tacute_gastric_mucosal_erosion\tade\t\n0\t0\t0\t0\t0\t0.9901\t0.0099\t\n0\t0\t0\t0\t1\t0.8431\t0.1569 \t\n1\t0\t0\t0\t0\t0.8947\t0.1053\t\n1\t0\t0\t0\t1\t1.0000\t0.0000\t\n\nNode: anticoagulants\n \nliver_cirrhosis\tshigella\tesophageal_... ``` Very cool new feature! Can't wait until it is "purdied" up!

kingfish777

> gfci.discrete( df= maxPathLength= verbose= structurePrior= significance= java.parameters= samplePrior= completeRuleSetUsed= priorKnowledge= maxDegree= faithfulnessAssumed= > gfci.discrete(df = dat) Error: could not find function "gfci.discrete"

kingfish777

whereas output graphNEL from pcmax, gfci.discrete, etc. is valid. FYI! -S

kingfish777

no pcmax implementation in bd2kccd/r-causal

6

Greetings, Please put a means to implement pcmax in r-causal. I am performing randomized sub-sampling of millions of rows/observations (and between 20 to 30K+ discrete binary variables) and I am...

kingfish777

Hi, This is Ruben in behalf the CCD-helpdesk. Can you add this github user: "ccd-helpdesk" as members of the bdk2kccd/r-causal repository. We just want to be notified in our gmail...

ccd-helpdesk

setMaxDegree error

7

running current r-causal in master Error in .jcall(fgs_instance, "V", "setMaxDegree", as.integer(maxDegree)) : method setMaxDegree with signature (I)V not found

espinoj

Availability for R version 3.3.1

1

Hello! Will this package be available for the latest R version in the future? Thanks, -Josefina

josefinacmenendez

is it possible to increase java heap space?

4

Is it possible to increase java heap space from within R? My data consists of 3.6M observations of 20 variables. This was from using GFCI, the latest addition. Thanks! Error...

kingfish777

Please add "MULT" (row multiplier) functionality. Best, Scott

kingfish777

I tested the installation on my windows 7, got an error message after I ran `install_github("bd2kccd/tetradR")`. Below is the content from RStudio. ``` R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree"...

yuanzhou