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`--swipe` not producing any output

Open bernt-matthias opened this issue 3 weeks ago • 1 comments

Seems that since 2.1.15 the following command gives not output

diamond blastx --db 'db.dmnd' --query 'nucleotide.fasta' --swipe

using https://github.com/bernt-matthias/tools-iuc/blob/topic/diamon-updates/tools/diamond/test-data/db.dmnd and https://github.com/bernt-matthias/tools-iuc/blob/topic/diamon-updates/tools/diamond/test-data/nucleotide.fasta

without --swipe I get results.

Same effect when using blastp and https://github.com/bernt-matthias/tools-iuc/blob/topic/diamon-updates/tools/diamond/test-data/protein.fasta

I'm using the versions from conda-forge, but I also tried the binaries released here.

bernt-matthias avatar Dec 05 '25 13:12 bernt-matthias

Thanks, it will be fixed in the next release. Fine to use an older version until then.

bbuchfink avatar Dec 09 '25 14:12 bbuchfink