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Diamond view throws segmentation fault (core dumped) error

Open SaimMomin12 opened this issue 1 year ago • 1 comments

Hi,

I have a Diamond DAA file (ultimately small in size) which was the ouput from Diamond blastx tool using the lastest version.

When I try to convert the DAA file to XML file using the following command, I get segmentation fault(core dumped) error.

diamond view --threads 8 --daa results.daa --outfmt 5 --max-target-seqs 1 --out result.xml

Error traceback as follows

#CPU threads: 8 Scoring parameters: (Matrix=blosum62 Lambda=0.267 K=0.041 Penalties=11/1) DB sequences = 2 DB sequences used = 2 DB letters = 568 #Target sequences to report alignments for: 1 Segmentation fault (core dumped)

Any suggestions how can this be solved?

SaimMomin12 avatar Mar 14 '24 14:03 SaimMomin12

If you provide a copy of your DAA file I can have a look.

bbuchfink avatar May 27 '24 13:05 bbuchfink

This should be fixed in the latest release.

bbuchfink avatar Jan 27 '25 07:01 bbuchfink