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read numbers in diamond input, output and Megan "no hits"

Open rocherbpb opened this issue 1 year ago • 1 comments

I understand that diamond output read number may be considerably less than diamond input read number, as the output excludes reads for which no alignment is found i.e. excludes "no hit" reads.
How is it then that reads can end up in the "no hit" node when viewed in Megan?

rocherbpb avatar Feb 01 '24 14:02 rocherbpb

Maybe the target has no taxonomic assignment or something, but I don't know how Megan works. You can ask your question here: https://megan.cs.uni-tuebingen.de/

bbuchfink avatar Feb 02 '24 12:02 bbuchfink