Blast running in a loop for nanopore data

Open bioinfo23 opened this issue 2 years ago • 1 comments

Hi ! I am using diamond blast (blastx) to align nanopore reads against NR database. The process runs fine until the last bin but suddenly gets in a loop and restarts the complete process again. It works fine on 1000 reads but dowmsampling to 1 million also shows same issue without throwing any error.

Oct 11 '23 11:10 bioinfo23

I'm not sure I fully understand, can you run diamond with the --log option and send me the resulting diamond.log file?

Oct 23 '23 13:10 bbuchfink