diamond icon indicating copy to clipboard operation
diamond copied to clipboard

Integrate clusters with taxonomy information | Feature request

Open RocesV opened this issue 2 years ago • 1 comments

Thank you for the very awesome tool.

Currently, i am working with diamond cluster and all of my sequences have taxID associated. I was wondering if it is possible to implement some kind of integration in diamond cluster using this information so the final reported clusters also have the LCA (lowest common ancestor) or majority vote (https://github.com/apcamargo/taxopy) TaxID information (using the TaxIDs of their respective members).

I think that MMSeq2 have this tool implemented (https://github.com/emepyc/Blast2lca) so maybe this could be suitable for the realign step.

Again, thank you for your assistance! 😄

RocesV avatar Jul 05 '23 12:07 RocesV

That would certainly be a useful feature, I will consider implementing it.

bbuchfink avatar Jul 12 '23 11:07 bbuchfink