bbuchfink
Misplaced XML tag in 2.1.4
The problem in #191 seems to be back, in a similar format and the same misplaced tag as before. I encountered this issue running funannotate, more context and some test output files are on an issue in that repo and in my comments on said issue.
I've attached the same files here. Old_version has a short output xml example with the tags in what I presume is the correct spot, and new_version has an output xml example with the problem. test_repeats xml is the full output of a test run from funannotate that shows the full pattern: an extra </Hit_hsps> tag on line 27 and then, as far as i can tell, missing </Hit_hsps> tags in the rest of the file.
These files are the output of a command something like diamond blastp --sensitive --query evm.round1.proteins.fa --threads 6 --out repeats_v0.9.17.xml --db /usr/local/share/funannotate/repeats.dmnd --evalue 1e-10 --max-target-seqs 1 --outfmt 5
