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recluster workflow option `d` is not permitted
I am trying to reuse the workflows from the DeepClust preprint, but I am running into an error with the recluster
step with the latest release v2.1.0. The deepclust
/cluster
and the realign
workflows work for me, but here is what happens with when I try therecluster
workflow:
$ diamond recluster
diamond v2.1.0.154 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)
#CPU threads: 80
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Error: Missing parameter: --db/-d
$ diamond recluster -d test.dmnd --clusters out.tsv
Error: Option is not permitted for this workflow: d
Unsure if bug or user error
This looks like a bug, will fix.
This should be fixed in version 2.1.1.