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recluster workflow option `d` is not permitted

Open cody-mar10 opened this issue 2 years ago • 2 comments

I am trying to reuse the workflows from the DeepClust preprint, but I am running into an error with the recluster step with the latest release v2.1.0. The deepclust/cluster and the realign workflows work for me, but here is what happens with when I try therecluster workflow:

$ diamond recluster

diamond v2.1.0.154 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 80
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Error: Missing parameter: --db/-d
$ diamond recluster -d test.dmnd --clusters out.tsv 

Error: Option is not permitted for this workflow: d

Unsure if bug or user error

cody-mar10 avatar Jan 27 '23 15:01 cody-mar10

This looks like a bug, will fix.

bbuchfink avatar Jan 27 '23 15:01 bbuchfink

This should be fixed in version 2.1.1.

bbuchfink avatar Feb 09 '23 09:02 bbuchfink