Computing alignments... No such file or directory

[mengxin-mx-cpu]

when I run braker2，In this section it breaks.I see the log,The command is:

/kasuza/example/braker/diamond blastp --db /kasuza/example/braker/traingenes.good.fa.nonreddb --outfmt 0 --query /kasuza/example/braker/traingenes.good.fa.nonreddb --threads 48 --out /kasuza/example/braker/traingenes.good.fa.blastout

Then I perform alone,It return error,I am not sure is the diamond's problem or not,but it seems to it's problem,I have tried the version 0.9.24 and diamond v2.0.5.143 (C). can you help me.

Processing query block 1, reference block 1/1, shape 2/2, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.002s] Building seed filter... [0.005s] Searching alignments... [0.002s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... No such file or directory terminate called after throwing an instance of 'File_read_exception' what(): Error reading file /kasuza/example/braker/diamond-tmp-DzkIVZ Aborted

[bbuchfink]

Please try the option --no-unlink and see if that fixes your problem.

[mengxin-mx-cpu]

It fixes my problem,Thanks a lot. I have to modify the "/opt/augustus-3.3.3/scripts/aa2nonred.pl" and add option --no-unlink

$cmdString = "$DIAMOND_PATH/diamond blastp --db $tempdbname --outfmt 0 --query $tempdbname --out $tempoutfile --no-unlink";