alignment statistics

[indren]

Hello, Is there an option to get a separate file for DIAMOND's run performance (i.e. number or percentage of aligned and un-aligned reads)? I can see in the manual there is an option to report unaligned queries for BLAST pairwise, BLAST XML and SAM format, but will this also work on BLAST tabular (default) format?

[bbuchfink]

You could use the options --log --no-heartbeat which will create a diamond.log file containing this information. Yes, reporting unaligned queries also works for the tabular format.