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Feature request: blast "-outfmt 11 " output from diamond view

Open g1o opened this issue 9 years ago • 4 comments

Could diamond view have the BLAST archive format as another option to view the results? I was thinking about using the BLAST archive format (ASN.1) as an input to blast_formatter to easily convert the output.

g1o avatar Dec 10 '15 13:12 g1o

Yes, I hope to include this in a future version.

bbuchfink avatar Dec 11 '15 20:12 bbuchfink

At least the ability to include the stitle in the blast tabular output would be incredibly helpful, because gi|66816243|ref|XP_642131.1| is markedly less informative than gi|66816243|ref|XP_642131.1| hypothetical protein DDB_G0277827 [Dictyostelium discoideum AX4] :)

tomck avatar Feb 25 '16 17:02 tomck

Thanks for the great program, gets a lot of use for big blastx type searches in our lab. I'm not sure if this request is still active but I'd like to add my support for this inclusion. I would love to incorporate Diamond into sequenceserver (sequenceserver.com) but it requires blast archive (outfmt 11). It would provide a fantastic front end to Diamond for if it had this output option. Thanks

daveb123 avatar Apr 07 '17 10:04 daveb123

I'll look into it but it's probably going to take some time.

bbuchfink avatar Apr 07 '17 13:04 bbuchfink