Latest/earlier windows versions stuck in "computing alignments" phase

[blaizereal]

Hi, Samples with higher (>10M) reads often stuck in "computing alignments" phase with no or minimal CPU usage. After several hours when you press "Return" in the terminal/command window everything went ok and the calculation continues. Command: diamond blastx -d nr -q sample.fa -o sample -f 100 --bin 4 -c 1 OS: win10 64 bit RAM: 128GB CPU: Xeon, with 32 cores

Thanks

[blaizereal]

Info: restarting system solves this issue....

[bbuchfink]

Hi,

sorry for the late reply. I will try to run a larger job on Windows and see if I can reproduce the problem.

Have you tried if this problem also occurs on Linux?

Best regards,

Benjamin

[blaizereal]

Hi, no prob; linux versions not affected by this issue, but aligning (as I wrote) and database creation (it's a newly discovered bug) sometimes freezes down on Windows 10 / Server edition.

Thanks: B

[blaizereal]

More information: first computing alignments steps: Linux: 252.988s (Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz * 32) 256GB RAM Win10: 1063.84s, Intel(R)_Xeon(R)CPU_E5-2665_0@_2.40GHz * 32 128GB RAM, getting slower, with decreasing CPU utilization