acdc_segmenter
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baumgach
Public code for our submission to the 2017 ACDC Cardiac Segmentation challenge
Bumps [numpy](https://github.com/numpy/numpy) from 1.16.1 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
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Bumps [pillow](https://github.com/python-pillow/Pillow) from 5.4.1 to 9.0.1. Release notes Sourced from pillow's releases. 9.0.1 https://pillow.readthedocs.io/en/stable/releasenotes/9.0.1.html Changes In show_file, use os.remove to remove temporary images. CVE-2022-24303 #6010 [@radarhere, @hugovk] Restrict builtins within...
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.6.1 to 3.15.0. Release notes Sourced from protobuf's releases. Protocol Buffers v3.15.0 Protocol Compiler Optional fields for proto3 are enabled by default, and no longer require the...
after running the line python "evaluate /acdc_logdir/unet2D_bn_modified_wxent_bn_test" in path relative to working directory invalid syntax error is popping up
There is a typo in the following line in the README file, `python evaluate acdc_logdir/unet3D_bn_modified_wxent` It should read, `python evaluate_patients.py acdc_logdir/unet3D_bn_modified_wxent`
Bumps [dask](https://github.com/dask/dask) from 1.1.1 to 2021.10.0. Commits 97494ff bump version to 2021.10.0 ac01ddc da.store to create well-formed HighLevelGraph (#8261) 9f0f002 CI: force nightly pyarrow in the upstream build (#8281) a544670...
Bumps [opencv-python](https://github.com/skvark/opencv-python) from 4.0.0.21 to 4.2.0.32. Release notes Sourced from opencv-python's releases. 4.2.0.32 opencv-python: https://pypi.org/project/opencv-python/ opencv-contrib-python: https://pypi.org/project/opencv-contrib-python/ opencv-python-headless: https://pypi.org/project/opencv-python-headless/ opencv-contrib-python-headless: https://pypi.org/project/opencv-contrib-python-headless/ OpenCV version 4.2.0. Changes: macOS environment updated from xcode8.3...
Traceback (most recent call last): File "evaluate_patients.py", line 400, in metrics_acdc.main(path_gt, path_pred, path_eval) File "/home/sivajyothi/acdc_segmenter/metrics_acdc.py", line 312, in main df = compute_metrics_on_directories_raw(path_gt, path_pred) File "/home/sivajyothi/acdc_segmenter/metrics_acdc.py", line 109, in compute_metrics_on_directories_raw hausdorff_list.append(hd(gt_binary,...
In https://github.com/baumgach/acdc_segmenter/blob/3cbc10c11142dfa00df7efb804adb95ede9cbd3f/metrics_acdc.py#L118, hausdorff metric is set to 1 when either one of groundtruth or the prediction is missing. Could the logic behind this be explained?
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.6.1 to 3.18.3. Release notes Sourced from protobuf's releases. Protocol Buffers v3.18.3 C++ Reduce memory consumption of MessageSet parsing This release addresses a Security Advisory for C++...