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Published 20 hours ago • verified publisher icon basilkhuder

Any idea about the multiple sample looms to integrated by loompy.combine function?

Open honghh2018 opened this issue 3 years ago • 1 comments

Hi all, Thanks to develop the great pipeline to manipulate the RNA velocity between seurat and anndata object. I wonder that the vignette you post about the merge is one by one to filter and then taking the sample_one.concatenate function to merge the loom data. in my case, i used to the loompy.combine function to aggregate 20 samples' loom and then filter the barcode identical with seurat's barcode. after that, using the seurat object convert to anndata to analyize the velocity. Is that right ? and can the velocity apply to the multiple samples?
Any advice would be appreciated. Best, Hanhuihong

honghh2018 avatar Jul 08 '21 00:07 honghh2018

Had anyone hear this?

honghh2018 avatar Jul 09 '21 00:07 honghh2018