balston

Added MPI support packages: ``` ./R-4.2.3_MPI_install 2>&1 | tee ~/Software/R/R-4.2.3_MPI_install.log-18042023 ``` without errors.

Module bundle done and single Bioconductor package build script done. To use R 4.2.3 the following module command are needed: ``` module -f unload compilers mpi gcc-libs module load beta-modules...

OK I've now tried to install inferCNV with R 4.2.3 from my userid using: ``` module -f unload compilers mpi gcc-libs module load beta-modules module load r/r-4.2.3_bc-3.16 R if (!requireNamespace...

JAGS 4.3.2 built and modules updated.

Trying to build the rjags package but it is failing.

OK I've worked out what the problem is - JAGS 4.3.2 is too new for the version of rjags on CRAN. I've done a test build of JAGS 4.3.1 in...

JAGS 4.3.1 installed, modules updated. Installing _rjags_ package centrally using: ``` ./R-4.2.3_single_package_install rjags 'configure.args="--enable-rpath"' ``` works: ``` ** R ** data ** byte-compile and prepare package for lazy loading **...

I've now been able to install the infercnv package from a clean R session in my account: ``` * installing *source* package ‘infercnv’ ... ** using staged installation ** R...

I've emailed the user about InverCNV.

Next task is to check out the R MPI stuff.