balston

Need to use the _parafile.sh_ from the NONMEM 7.3 installation for parallel runs using Grid Engine and possibly some of the other set up files.

There are three files that need changing/adding to the _util_ or _run_ directories. _util:_ ``` mpiloc-setup nmfe75 ``` and _run_: ``` nmfe75 parafile.sh ```

As _ccspapp_: ``` cd /shared/ucl/apps/NONMEM/nm751_Intel/util cp ~ccaabaa/Scratch/Software/NONMEM/mpiloc-setup . cp ~ccaabaa/Scratch/Software/NONMEM/nmfe75 . cd ../run cp ~ccaabaa/Scratch/Software/NONMEM/nmfe75 . cp ~ccaabaa/Scratch/Software/NONMEM/parafile.sh . ```

Now to try running a test parallel job.

Forgot something - need a module file.

Module file done and test job submitted: ``` job-ID prior name user state submit/start at queue slots ja-task-ID ----------------------------------------------------------------------------------------------------------------- 464106 0.00000 NONMEM_Int ccaabaa qw 09/27/2023 17:33:45 12 ```

I made a mistake in the module file prereqs which I think I've fixed. Test job resubmitted.

Test job has worked using a job script like this: ``` #!/bin/bash -l # Batch script to run a MPI NONMEM job on Myriad # NONMEM Version 7.5.1 Intel Fortran...

Kathleen -- As _ccspapp_: ``` module load compilers/intel/2018/update3 module load mpi/intel/2018/update3/intel cd ~/Scratch/Software/NONMEM/nm751CD cp /shared/ucl/apps/NONMEM/nm730_Intel/nonmem.lic . ./SETUP75 /home/ccspapp/Scratch/Software/NONMEM/nm751CD /shared/ucl/apps/NONMEM/nm751_Intel ifort y ar same rec i unzip nonmem75e.zip nonmem75r.zip ```

Installation completed and serial test worked. Now updating set up files (same as on Myriad): ``` cd /shared/ucl/apps/NONMEM/nm751_Intel/util cp ~ccaabaa/Scratch/Software/NONMEM/mpiloc-setup . cp ~ccaabaa/Scratch/Software/NONMEM/nmfe75 . cd ../run cp ~ccaabaa/Scratch/Software/NONMEM/nmfe75 . cp...