Migrate amazon-genomics-cli/extras/agc-minimal-permissions/ to CDK v2 and ensure completeness

[markjschreiber]

Description

CDK v1 has entered maintenance mode and the main CDK package for AGC is on V2. We should also update this package. We will also need to validate that these roles maintain viabilty

Proposed Solution

Update CDK dependencies to same version as main CDK package. Ensure that all steps (account activate/ deactivate, context deploy, destroy, workflow run, cancel and logs) are accessible using the appropriate roles.

Update commit/ PR template to add verification that the requester has tested their change with these roles and updated these roles with the minimum appropriate permissions.