Austin Wang

Azimuth data download hits timeout

1

I'm trying to map my scRNA-seq dataset to the newly released Azimuth heart reference. However, there seems to be a 60-second time limit that's preventing the reference data from fully...

Center peak regions at summit in `modisco seqlet-bed`

1

Chrombpnet defines the peak center as `start + summit`, not the midpoint between `start` and `end`. It would be good to make `write_bed_from_h5` consistent with this convention. https://github.com/jmschrei/tfmodisco-lite/blob/d6716a56c407040e73f48cf0662a432035e4fde2/modiscolite/io.py#L349C1-L350C1 So `absolute_peak_center...