Atul Kakrana

icon indicating a website link http://sites.udel.edu/kakrana/ icon indicating an email [email protected]

icon company Delaware Biotechnology Institute icon location Newark, DE icon location AI For Precision Medicine, Human Genetics and Health Sciences

Results 3 comments of Atul Kakrana

NER detokenize index error

Here are my commands: ``` # predict labels for test set mkdir $OUTPUT_DIR python3 run_ner.py \ --do_train=false \ --do_predict=true \ --vocab_file=$BIOBERT_DIR/vocab.txt \ --bert_config_file=$BIOBERT_DIR/bert_config.json \ --init_checkpoint=$TRAINED_CLASSIFIER \ --data_dir=$NER_DIR/ \ --max_seq_length=256 \...

NER detokenize index error

Hi Wonjin, Thanks for much for prompt help. I used SpaCy to tokenize (i.e. preprocess) my dataset. I think there might be two separate issues that's causing the problem. Please...

NER detokenize index error

Hi @wonjininfo , I updated my preprocessing workflow. Now it uses BioBert's tokenizers. I guess that fixes "Issue with my processing," as mentioned in my last comment. I still get...