Albert Tian Chen

Add histogram of all sequences under location-date plot

2

This should help with identifying any bias caused by a lack of sequencing. Also fix the y-axis labels for percentage mode

Allow range selection from our GroupStack plot Basic workflow for this: 1. Capture shift-click events and bubble them up to React to handle 2. Since Vega (and not React) determines...

Select multiple lineages/SNVs from legend (ctrl+click, shift+click)

2

This should be easy to do in the legend and the table since everything is in a list. Not sure how i'll do that logic for the barplot though

Since we can't adjust the (erroneous) collection dates themselves, maybe change the definition so that we're cutting off at the 10th collected sequence instead of the 1st.

See: https://nextstrain.org/blog/2020-06-02-SARSCoV2-clade-naming These are same clades as on Nextstrain

Not sure how I'll do this in the table layout. It might be constrained to one primer at a time - and have an extra row in the table (like...

Previously the voxel offsets for the raw data and prediction labels in NeuroglancerRunViewer were in physical nanometer units instead of voxel units - and for me this produced volumes in...

Multiprocessing error during validation in LocalTorch compute context

3

**Describe the bug** When running [cosem_example.ipynb](https://github.com/janelia-cellmap/dacapo/blob/main/examples/distance_task/cosem_example.ipynb) on a local workstation with GPUs, the validation step during training throws the following error: ``` ... RuntimeError: Cannot re-initialize CUDA in forked subprocess....

**Describe the bug** I have an SBEM dataset collected at a voxel size of 9.8 x 9.8 x 25 nm. When I create the datasplit with: ```python input_resolution = Coordinate(25,...