Segmentation fault (core dumped)

[LuyaoRen]

Hi,

I am trying to use SVarp to detect SV from pangenome graph using this comman line svarp -a sample.gaf -g ref_graph.gfa -f sample.fq.gz -i sample.

ref_graph.gfa was generated by minigraph minigraph -cxggs -t24 T2T-CHM13v2.fasta sample.hap1.fasta sample.hap2.fasta > ref_graph.gfa, alignment was generated by minigraph minigraph -t 24 -cx lr ref_graph.gfa sample.fq.gz > sample_aligned.gaf.

The error message was:

Using wtdbg2 for assembly...
No phase information provided (--phase). SVs will not be phased...

...hallo, merhaba, ola, salaam, hello!!! SVarp is running...

Parameters:
	Minimum read support: 5
	Minimum distance threshold: 100

	Minimum map ratio: 0.9
	Precise clipping (Graphaligner): 0.97
	Alignment score (Graphaligner): 5000


Input files:
	sample_aligned.gaf
	ref_graph.gfa
	sample.fq.gz

Log folder:
	/svarp_log/

Reading the GFA file
Reading the GAF file
Segmentation fault (core dumped)

Can you help me and identify which step I might have gotten wrong? Thank you!