BandageNG
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asl
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Are any command line options supported? For example, to change defaults, etc. I tried `--help` but got the following. I am on Ubuntu 20.04. ``` ./BandageNG-3b69a79-x86_64.AppImage --help qt.qpa.plugin: Could not...
* Model around GAF format: list all paths, some paths queries (like in #4) * Maybe join with BLAST hits and their paths @ekg I started to draft better UI...
Currently assembly graphs holds bunch of data structures with custom colors, styles, etc. It should be generalized and centralized.
Currently error handling is mix-and-match of different things: exceptions are thrown, error strings are returned, etc. Make uniform error handling.
Currently every node stores both incoming and outgoing edges. This doubles the memory required for edge storage, but more importantly, makes inefficient node-edge queries (e.g. we need to filter stuff...
Bandage is fantastic, I'm glad to hear you are continuing its development. I was wondering if it would be possible to implement a save/load feature? This would be useful for...
In addition to coloring based on CSV, you could add an option to select all nodes with the same "tag" in CSV input. That will allow manipulating them, e.g. hide...
Update the docs from original Bandage wiki. Adding descriptions of new things, etc.