nf-test icon indicating copy to clipboard operation
nf-test copied to clipboard

Problem when pipeline param is the same as nf-test param

Open fmalmeida opened this issue 3 months ago • 0 comments

Hi, I am currently having a problem that is as follows. I have a pipeline which as a parameter outputDir that defaults to ./. This variable also exists for nf-test, but defaults to output.

When running nf-tests, it fails because it cannot find any outputs. The pipeline wrote in ./ and nf-test is looking at output.

MicrosoftTeams-image

Did anything change on how nf-test solves it? This problem happens with the latest nf-test version but it works properly with version 0.7.3.

I have also tried adding the following in the shared .nf-test.config:

params {
  outputDir = 'output'
}

But it does not work as well.

fmalmeida avatar Mar 05 '24 11:03 fmalmeida