Ashish Damania

Results 23 comments of Ashish Damania

Hi @emankhalaf It works for me. I was able to run both the "ktImportText" and "ImportText.pl " on this example file attached here. [text.txt](https://github.com/marbl/Krona/files/2206027/text.txt) `./ImportText.pl /Users/deepthoughts/Desktop/text.txt -q` and `ktImportText /Users/deepthoughts/Desktop/text.txt`...

Not sure if this will work: try` ktImportBLAST ` Also, I wonder if you used --salltitles option when running Diamond.

Did you try running `updateTaxonomy.sh` Is it installed with all helper files? https://github.com/marbl/Krona/wiki/Installing

Update: I also find that in my ContigIdentifications.tsv file, "Sequence Name" is being truncated to 40 characters. I am not sure if this one of the reasons causing the gene_ontology...

Here is my openmpi info: I installed openmpi from source: ``` $mpiexec --allow-run-as-root --version mpiexec (OpenRTE) 1.8.3 ```

Agree, Open MPI problem. It works fine if installed from Ubuntu 14.04 packages.

I could not dig into any specifics. I would love to find out but I am constrained by the time right now. Thanks for the immediate response.

I tested installation of Ray on Debian via Virtual Box and I was not able to reproduce this issue. The above issue was caused on the Google Compute Engine machine...

Hi Sébastien, I tried to repeat this error on Google cloud compute again. 1) Added SID sources to the /etc/apt/sources.list ``` deb http://gce_debian_mirror.storage.googleapis.com/ wheezy main contrib non-free deb-src http://gce_debian_mirror.storage.googleapis.com/ wheezy...

Here is the strace output ``` execve("/usr/bin/Ray", ["Ray", "--version"], [/* 18 vars */]) = 0 brk(0) = 0x1ee8000 access("/etc/ld.so.nohwcap", F_OK) = -1 ENOENT (No such file or directory) mmap(NULL, 8192,...