ashipde

SAM4WebLogo bug? Some output sequence lengths are short by 1 character

1

I am using the latest master version of jvarkit with Java 1.8 on CentOS with a command like: `java -jar sam4weblogo.jar -r X:129920493-129920543 myData.bam 2> /dev/null | awk 'NR%2==0' >...

This is not an Issue, just a brief on how I was able to use SAUCIE (master version as of today) with current versions of Tensorflow (2.1.0) and Numpy (1.18.1)....

Use with CyTOF data?

1

Can we use BERMUDA for mass cytometry (CyTOF) data? Unlike scRNA seq. data, CyTOF data may have only 20-40 variables (markers).